dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package petsc dpkg-buildpackage: source version 3.0.0.dfsg-5lenny1 dpkg-buildpackage: source changed by Adam C. Powell, IV dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh_testdir if [ -e patch ]; then \ debian/rules unpatch; \ fi if [ -f TAGS ]; then mv TAGS thetags; fi dh_clean rm -rf debian/libpetsc3.0.0 debian/libpetsc3.0.0-dev \ debian/libpetsc3.0.0-dbg if [ -f thetags ]; then mv thetags TAGS; fi rm -f build* install* debian/*.substvars debian/extemp debian/libpetsc3.0.0-dev.docs debian/libpetsc3.0.0-dev.postinst debian/libpetsc3.0.0-dev.prerm rm -f `find . -name \*.o -print` `find . -name \*.pyc -print` rm -rf lib linux-gnu-c-debug linux-gnu-c-opt configure.log dpkg-source -b petsc-3.0.0.dfsg dpkg-source: info: using source format `1.0' dpkg-source: info: building petsc using existing petsc_3.0.0.dfsg.orig.tar.gz dpkg-source: info: building petsc in petsc_3.0.0.dfsg-5lenny1.diff.gz dpkg-source: info: building petsc in petsc_3.0.0.dfsg-5lenny1.dsc debian/rules build if [ ! -e patch ]; then \ QUILT_PATCHES=debian/patches quilt push -a || test $? = 2; \ fi Applying 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src/vec/vec/utils/vscat.c.html patching file tutorials/makefile.html patching file tutorials/multiphysics/ff1.c.html patching file tutorials/multiphysics/ff2.c.html patching file tutorials/multiphysics/makefile.html patching file tutorials/multiphysics/mp.c.html patching file tutorials/multiphysics/mp.h.html patching file tutorials/multiphysics/p1.c.html patching file tutorials/multiphysics/p2.c.html Applying patch build-debug-nowarn.patch patching file config/PETSc/utilities/debugging.py Applying patch build-no-rpath.patch patching file config/BuildSystem/config/setCompilers.py Applying patch docs.patch patching file docs/bugreporting.html patching file docs/index.html patching file docs/faq.html Applying patch example-src-dir.patch patching file src/mat/examples/tests/ex110.c patching file src/mat/examples/tutorials/ex4.c patching file src/mat/examples/tutorials/ex5.c Applying patch install-dir.patch patching file src/sys/utils/makefile patching file src/sys/objects/makefile Hunk #1 succeeded at 3 with fuzz 1. Applying patch lib-versions.patch patching file conf/rules Applying patch sprng-2.patch patching file config/PETSc/packages/sprng.py patching file src/sys/random/impls/sprng/sprng.c Applying patch clean-no-double-colon.patch patching file conf/rules Hunk #1 succeeded at 103 with fuzz 1 (offset 11 lines). Now at patch clean-no-double-colon.patch touch patch PETSC_DIR=/home/hazelsct/petsc-3.0.0.dfsg PETSC_ARCH=linux-gnu-c-debug \ ./config/configure.py --with-debugging=1 \ --useThreads 0 --with-mpi-dir=/usr/lib/openmpi \ --with-blas-lib=-lblas --with-lapack-lib=-llapack \ --with-umfpack=1 --with-umfpack-include=/usr/include/suitesparse \ --with-umfpack-lib=[/usr/lib/libumfpack.so,/usr/lib/libamd.so] \ --with-superlu=1 --with-superlu-include=/usr/include/superlu \ --with-superlu-lib=/usr/lib/libsuperlu.so \ --with-spooles=1 --with-spooles-include=/usr/include/spooles \ --with-spooles-lib=/usr/lib/libspooles.so \ --with-hypre=1 --with-hypre-dir=/usr \ --with-scotch=1 --with-scotch-include=/usr/include/scotch \ --with-scotch-lib=/usr/lib/libscotch.so ================================================================================= Configuring PETSc to compile on your system ================================================================================= TESTING: configureExternalPackagesDir from config.framework(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/framework.py:815) TESTING: configureLibrary from PETSc.packages.PVODE(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/NetCDF.py:10) TESTING: configureMkdir from config.programs(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/programs.py:21) TESTING: configurePrograms from config.programs(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/programs.py:43) TESTING: configureDebuggers from PETSc.utilities.debuggers(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/debuggers.py:22) TESTING: configureMake from PETSc.utilities.Make(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/Make.py:21) TESTING: configureCLanguage from PETSc.utilities.languages(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/languages.py:43) TESTING: configureLanguageSupport from PETSc.utilities.languages(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/languages.py:49) TESTING: configureExternC from PETSc.utilities.languages(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/languages.py:66) TESTING: configureFortranLanguage from PETSc.utilities.languages(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/languages.py:72) TESTING: configureMercurial from config.sourceControl(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/sourceControl.py:23) TESTING: configureCVS from config.sourceControl(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/sourceControl.py:30) TESTING: configureSubversion from config.sourceControl(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/sourceControl.py:35) TESTING: configureDirectories from PETSc.utilities.petscdir(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/petscdir.py:37) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/petscdir.py:109) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/petscdir.py:116) TESTING: configureETags from PETSc.utilities.Etags(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/Etags.py:27) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/dataFilesPath.py:29) TESTING: checkMPICompilerOverride from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1269) TESTING: checkVendor from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:273) TESTING: checkInitialFlags from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:283) TESTING: checkCCompiler from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:394) TESTING: checkCPreprocessor from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:451) TESTING: checkCxxCompiler from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:557) TESTING: checkCxxPreprocessor from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:616) TESTING: checkFortranCompiler from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:726) TESTING: checkFortranComments from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:768) TESTING: checkPIC from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:807) TESTING: checkLargeFileIO from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:836) TESTING: checkArchiver from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:930) TESTING: checkSharedLinker from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1037) TESTING: checkSharedLinkerPaths from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1113) TESTING: checkLibC from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1125) TESTING: checkDynamicLinker from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1174) TESTING: output from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1220) TESTING: configureCompilerFlags from config.compilerFlags(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilerFlags.py:66) TESTING: configureDebugging from PETSc.utilities.debugging(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/debugging.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/arch.py:39) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/bmakeDir.py:26) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/sharedLibraries.py:41) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/sharedLibraries.py:64) TESTING: checkRestrict from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:134) TESTING: checkCFormatting from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:276) TESTING: checkCStaticInline from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:105) TESTING: checkDynamicLoadFlag from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:286) TESTING: checkCLibraries from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:161) TESTING: checkRestrict from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:134) TESTING: checkCxxNamespace from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:324) TESTING: checkCxxOptionalExtensions from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:299) TESTING: checkCxxStaticInline from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxLibraries from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:339) TESTING: checkFortranTypeSizes from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:471) TESTING: checkFortranNameMangling from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:530) TESTING: checkFortranNameManglingDouble from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:563) TESTING: checkFortranPreprocessor from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:573) TESTING: checkFortranDefineCompilerOption from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:594) TESTING: checkFortranLibraries from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:611) TESTING: checkFortranLinkingCxx from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:921) TESTING: checkFortran90 from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:956) TESTING: checkFortran90Interface from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:1016) TESTING: checkFortran90Array from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:1054) TESTING: setupFrameworkCompilers from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:1177) TESTING: configureLibrary from PETSc.packages.Mathematica(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/Mathematica.py:15) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/fortranCPP.py:28) TESTING: checkStdC from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:76) TESTING: checkStat from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:109) TESTING: checkSysWait from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:144) TESTING: checkTime from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:166) TESTING: checkMath from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:174) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: checkRecursiveMacros from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:189) TESTING: checkMemcmp from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:79) TESTING: checkSysinfo from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:102) TESTING: checkVPrintf from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:125) TESTING: checkVFPrintf from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:132) TESTING: checkVSNPrintf from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:139) TESTING: checkSignalHandlerType from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:147) TESTING: checkFreeReturnType from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:157) TESTING: checkVariableArgumentLists from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:163) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: configureFPTrap from PETSc.utilities.FPTrap(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/FPTrap.py:27) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/getResidentSetSize.py:32) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/fortranCommandLine.py:26) TESTING: checkSizeTypes from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:44) TESTING: checkFileTypes from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:54) TESTING: checkIntegerTypes from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:49) TESTING: checkPID from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:60) TESTING: checkUID from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:64) TESTING: checkSignal from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:71) TESTING: checkC99Complex from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:92) TESTING: checkCxxComplex from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:101) TESTING: checkFortranKind from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:122) TESTING: checkFortranDReal from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:134) TESTING: checkConst from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:142) TESTING: checkEndian from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:198) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkBitsPerByte from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:293) TESTING: configureScalarType from PETSc.utilities.scalarTypes(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/scalarTypes.py:32) TESTING: configurePrecision from PETSc.utilities.scalarTypes(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/scalarTypes.py:48) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkMath from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:201) TESTING: checkMathErf from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:217) TESTING: checkDynamic from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:226) TESTING: configureTimers from PETSc.utilities.timer(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/timer.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:35) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:45) TESTING: configureMissingFunctions from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:51) TESTING: configureMissingSignals from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:71) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:88) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:134) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/libraryOptions.py:46) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/libraryOptions.py:98) TESTING: configureLibrary from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:679) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: configureConversion from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:185) TESTING: configureMPI2 from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:169) TESTING: configureTypes from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:205) TESTING: configureMPITypes from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:216) TESTING: configureMissingPrototypes from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:273) TESTING: SGIMPICheck from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:588) TESTING: CxxMPICheck from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:598) TESTING: FortranMPICheck from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:617) TESTING: configureIO from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:642) TESTING: checkSharedLibrary from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:122) TESTING: configureMPIEXEC from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:134) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/Matlab.py:40) TESTING: alternateConfigureLibrary from PETSc.packages.TetGen(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from config.packages.Boost(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/package.py:421) TESTING: alternateConfigureLibrary from PETSc.packages.Sieve(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.expat(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.hdf5(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.Generator(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureLibrary from PETSc.packages.Scotch(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:324) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: checkSharedLibrary from PETSc.packages.Scotch(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:320) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from config.packages.Fiat(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/package.py:421) TESTING: alternateConfigureLibrary from PETSc.packages.FFC(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.babel(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.P3Dlib(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.Suggar(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureLibrary from config.packages.BlasLapack(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/BlasLapack.py:429) TESTING: checkLib from config.packages.BlasLapack(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkESSL from config.packages.BlasLapack(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/BlasLapack.py:483) TESTING: checkPESSL from config.packages.BlasLapack(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/BlasLapack.py:489) TESTING: checkMissing from config.packages.BlasLapack(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/BlasLapack.py:495) TESTING: configureLibrary from config.packages.UMFPACK(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/package.py:367) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: checkSharedLibrary from config.packages.UMFPACK(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/package.py:417) TESTING: configureLibrary from PETSc.packages.SuperLU(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/SuperLU.py:75) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: checkSharedLibrary from PETSc.packages.SuperLU(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:320) TESTING: alternateConfigureLibrary from PETSc.packages.spai(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.pARMS(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.PLAPACK(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.ml(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.PaStiX(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureLibrary from PETSc.packages.hypre(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/hypre.py:103) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: checkSharedLibrary from PETSc.packages.hypre(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:320) TESTING: alternateConfigureLibrary from PETSc.packages.blopex(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureLibrary from PETSc.packages.spooles(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:324) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: checkSharedLibrary from PETSc.packages.spooles(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:320) TESTING: alternateConfigureLibrary from PETSc.packages.blacs(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.SCALAPACK(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.Numpy(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.ParMetis(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.Prometheus(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureLibrary from PETSc.packages.X11(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/X11.py:91) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.Zoltan(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureRegression from PETSc.utilities.Regression(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/Regression.py:32) TESTING: configureInline from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:231) TESTING: configureSolaris from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:241) TESTING: configureLinux from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:255) TESTING: configureWin32 from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:261) TESTING: configureScript from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:327) TESTING: configureInstall from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:357) TESTING: configureGCOV from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:371) TESTING: configureFortranFlush from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:376) TESTING: alternateConfigureLibrary from PETSc.packages.petsc4py(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/petsc4py.py:69) TESTING: alternateConfigureLibrary from PETSc.packages.mpi4py(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/mpi4py.py:54) Compilers: C Compiler: mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -g3 C++ Compiler: mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -g Fortran Compiler: mpif90 -Wall -Wno-unused-variable -g Linkers: Static linker: /usr/bin/ar cr PETSc: PETSC_ARCH: linux-gnu-c-debug PETSC_DIR: /home/hazelsct/petsc-3.0.0.dfsg ** ** Now build the libraries with "make all" ** Clanguage: C PETSc shared libraries: disabled PETSc dynamic libraries: disabled Scalar type:real MPI: Includes: -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib X11: Includes: [''] Library: ['-lX11'] BLAS/LAPACK: -llapack -lblas -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -L/lib -lm -lm -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -L/lib -lm -lm spooles: Includes: -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles Library: -L/usr/lib -lspooles hypre: Includes: -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include Library: -L/usr/lib -lHYPRE -lmpi_cxx -lstdc++ Scotch: Version: Includes: ['/usr/lib/openmpi/include', '/usr/lib/openmpi/lib', '/usr/include/scotch'] Library: ['/usr/lib/libscotch.so'] SuperLU: Includes: -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/superlu Library: -L/usr/lib -lsuperlu UMFPACK: Includes: -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib Library: -L/usr/lib -lumfpack -lamd /usr/bin/make PETSC_ARCH=linux-gnu-c-debug PETSC_DIR=/home/hazelsct/petsc-3.0.0.dfsg \ PETSC_INSTALL_DIR=/usr/lib/petscdir/3.0.0 make[1]: Entering directory `/home/hazelsct/petsc-3.0.0.dfsg' ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems To subscribe to the PETSc announcement list, send mail to majordomo@mcs.anl.gov with the message: subscribe petsc-announce To subscribe to the PETSc users mailing list, send mail to majordomo@mcs.anl.gov with the message: subscribe petsc-users ========================================== On Tue Jun 16 15:46:25 EDT 2009 on workhorse Machine characteristics: Linux workhorse 2.6.28-4-generic #9-Ubuntu SMP Tue Jan 6 19:33:48 UTC 2009 x86_64 GNU/Linux ----------------------------------------- Using PETSc directory: /home/hazelsct/petsc-3.0.0.dfsg Using PETSc arch: linux-gnu-c-debug ----------------------------------------- PETSC_VERSION_RELEASE 1 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 0 PETSC_VERSION_SUBMINOR 0 PETSC_VERSION_PATCH 5 PETSC_VERSION_DATE "Dec, 19, 2008" PETSC_VERSION_PATCH_DATE "Mon Apr 13 09:15:37 CDT 2009" PETSC_VERSION_HG "131aaf54d5a00500b8913c368c685dab5521f4c8" PETSC_VERSION_DATE_HG "Mon Apr 13 09:15:15 2009 -0500" PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: --with-debugging=1 --useThreads 0 --with-mpi-dir=/usr/lib/openmpi --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-umfpack=1 --with-umfpack-include=/usr/include/suitesparse --with-umfpack-lib="[/usr/lib/libumfpack.so,/usr/lib/libamd.so]" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=/usr/lib/libsuperlu.so --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=/usr/lib/libspooles.so --with-hypre=1 --with-hypre-dir=/usr --with-scotch=1 --with-scotch-include=/usr/include/scotch --with-scotch-lib=/usr/lib/libscotch.so --with-shared=0 Using configuration flags: #define INCLUDED_PETSCCONF_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_UMFPACK 1 #define PETSC_STATIC_INLINE static inline #define PETSC_HAVE_SPOOLES 1 #define PETSC_DIR_SEPARATOR '/' #define PETSC_HAVE_HYPRE 1 #define PETSC_PATH_SEPARATOR ':' #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_RESTRICT __restrict__ #define PETSC_HAVE_X11 1 #define PETSC_HAVE_SCOTCH 1 #define PETSC_HAVE_SUPERLU 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_HAVE_MPI 1 #define PETSC_HAVE_BLASLAPACK 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_MEMORY_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_PRINTF_FORMAT_CHECK(A,B) __attribute__((format (printf, A, B))) #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_USE_F90_SRC_IMPL 1 #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBBLAS 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBGFORTRAN 1 #define PETSC_HAVE_LIBLAPACK 1 #define PETSC_HAVE_LIBNSL 1 #define PETSC_HAVE_LIBMPI_CXX 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_LIBMPI_F77 1 #define PETSC_HAVE_LIBGCC_S 1 #define PETSC_HAVE_LIBGFORTRANBEGIN 1 #define PETSC_HAVE_LIBMPI_F90 1 #define PETSC_HAVE_LIBSTDC__ 1 #define PETSC_HAVE_LIBHYPRE 1 #define PETSC_HAVE_LIBAMD 1 #define PETSC_HAVE_LIBSUPERLU 1 #define PETSC_HAVE_LIBUTIL 1 #define PETSC_HAVE_LIBMPI 1 #define PETSC_HAVE_LIBOPEN_PAL 1 #define PETSC_HAVE_LIBUMFPACK 1 #define PETSC_HAVE_LIBSPOOLES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_LIBOPEN_RTE 1 #define PETSC_HAVE_LIBSCOTCH 1 #define PETSC_ARCH_NAME "linux-gnu-c-debug" #define PETSC_ARCH linux #define PETSC_DIR /home/hazelsct/petsc-3.0.0.dfsg #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_EXTERN_CXX #define PETSC_USE_ERRORCHECKING 1 #define PETSC_MISSING_DREAL 1 #define PETSC_SIZEOF_MPI_COMM 8 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETPWUID 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_SIGNAL_CAST #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define HAVE_GZIP 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_BLASLAPACK_UNDERSCORE 1 ----------------------------------------- Using include paths: -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch ------------------------------------------ Using C/C++ compiler: mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -g3 C/C++ Compiler version: Using Fortran compiler: mpif90 -Wall -Wno-unused-variable -g Fortran Compiler version: ----------------------------------------- Using C/C++ linker: mpicc Using Fortran linker: mpif90 ----------------------------------------- Using libraries: -L/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib -L/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lX11 -L/usr/lib -lspooles -lHYPRE -lmpi_cxx -lstdc++ -lsuperlu -lumfpack -lamd -llapack -lblas -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -L/usr/lib/gcc/x86_64-linux-gnu -lm -lm -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -lm -lm -lscotch -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -L/usr/lib/gcc/x86_64-linux-gnu -lm -lm -lmpi_cxx -lstdc++ -lmpi_cxx -lstdc++ -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl ------------------------------------------ Using mpiexec: mpiexec ========================================== /bin/rm -f -f /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib/libpetsc*.* /bin/rm -f -f /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include/petsc*.mod BEGINNING TO COMPILE LIBRARIES IN ALL DIRECTORIES ========================================= libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/inline libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/socket libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/socket/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/ascii libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/ascii/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/ascii/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/binary libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/binary/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/binary/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/binary/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/string libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/string/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/draw libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/draw/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/draw/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/vu libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/examples/tests libfast in: 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/home/hazelsct/petsc-3.0.0.dfsg/src/sys/random/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/random/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/random/impls/rand libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/random/impls/rand48 libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/bag libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/bag/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/bag/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/verbose libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/verbose/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/verbose/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/f90-src libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/f90-src/fsrc mpif90 -c -Wall -Wno-unused-variable -g -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o f90_fwrap.o f90_fwrap.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib/libpetsc.a f90_fwrap.o libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/f90-mod mpif90 -c -Wall -Wno-unused-variable -g -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petscmod.o petscmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib/libpetsc.a petscmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/interface/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls/seq libfast in: 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/home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/interface/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/general libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/general/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/stride libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/stride/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/block libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/block/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/block/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/utils/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/impls/constant libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/impls/string libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/f90-mod mpif90 -c -Wall -Wno-unused-variable -g -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petscvecmod.o petscvecmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib/libpetscvec.a petscvecmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/interface/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense/seq/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense/mpi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense/mpi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/spooles /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/superlu libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/umfpack libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/csrperm libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/crl libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi/spooles /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi/csrperm libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi/crl libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/aij libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/shell libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/shell/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/shell/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/seq/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/seq/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/mpi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/mpi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/adj libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/adj/mpi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/adj/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/maij libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/is libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/is/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/seq/spooles /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/seq/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/seq/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/mpi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/mpi/spooles /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/hypre libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/normal libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/normal/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/lrc libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/lrc/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/scatter libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/scatter/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/blockmat libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/blockmat/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/composite libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/composite/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/mffd libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/mffd/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/mffd/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/transpose libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/transpose/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/matfd libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/matfd/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/matfd/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/impls/scotch scotch.c: In function ‘MatPartitioningApply_Scotch’: scotch.c:132: warning: cast from pointer to integer of different size scotch.c:135: warning: cast to pointer from integer of different size scotch.c:137: warning: cast from pointer to integer of different size scotch.c:138: warning: cast to pointer from integer of different size scotch.c:139: warning: cast to pointer from integer of different size scotch.c:211: warning: cast from pointer to integer of different size libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/impls/scotch/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/impls/scotch/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/order libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/order/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/order/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/color libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/color/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/f90-mod mpif90 -c -Wall -Wno-unused-variable -g -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petscmatmod.o petscmatmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib/libpetscmat.a petscmatmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/jacobi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/jacobi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/none libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/sor libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/sor/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/shell libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/shell/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/bjacobi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/bjacobi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/bjacobi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/mg libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/mg/dmmg libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/mg/dmmg/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/mg/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/mg/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/eisens libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/eisens/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/asm libfast in: 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libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/hypre/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/tfs libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/fieldsplit libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/fieldsplit/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/factor libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/factor/lu libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/factor/ilu libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/factor/icc libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/factor/cholesky libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/factor/cholesky/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/factor/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/factor/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/galerkin libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/galerkin/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/openmp libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/asa libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/cp libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/bfbt libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/wb libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/wb/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/interface/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/cr libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/bcgs libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/bcgsl libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/bcgsl/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/cg libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/cg/cgne libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/cg/gltr libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/cg/gltr/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/cg/nash libfast in: 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/home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/rich libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/rich/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/lsqr libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/preonly libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/tcqmr libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/tfqmr libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/qcg libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/qcg/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/bicg libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/minres libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/symmlq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/lcd libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/ibcgs libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/f90-mod mpif90 -c -Wall -Wno-unused-variable -g -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petsckspmod.o petsckspmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib/libpetscksp.a petsckspmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/interface/noise libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/interface/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/mf libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/mf/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/ls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/ls/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/ls/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/tr libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/test libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/picard libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/examples/tutorials/ex10d libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/f90-mod mpif90 -c -Wall -Wno-unused-variable -g -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petscsnesmod.o petscsnesmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib/libpetscsnes.a petscsnesmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/explicit libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/explicit/euler libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/explicit/rk libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/explicit/rk/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/implicit libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/implicit/beuler libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/implicit/cn libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/pseudo libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/pseudo/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/f90-mod mpif90 -c -Wall -Wno-unused-variable -g -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petsctsmod.o petsctsmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib/libpetscts.a petsctsmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls/basic libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls/basic/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls/mapping libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls/mapping/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls/mapping/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/src libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/src/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/src/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/src/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/utils/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/adda libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/adda/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/adda/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/adda/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/f90-mod mpif90 -c -Wall -Wno-unused-variable -g -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petscdmmod.o petscdmmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib/libpetscdm.a petscdmmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/fun3d libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/fun3d/comp libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/fun3d/incomp libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/semiLagrange libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/semiLagrange/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/semiLagrange/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/semiLagrange/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/semiLagrange/impls/da libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/benchmarks libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/fortran libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/fortran/fsrc mpif90 -c -Wall -Wno-unused-variable -g -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o somefort.o somefort.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-debug/lib/libpetsc.a somefort.o libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include/finclude libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include/finclude/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include/finclude/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include/private libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include/sieve libfast in: /home/hazelsct/petsc-3.0.0.dfsg/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/tutorials/multiphysics Completed building libraries ========================================= Now to check if the libraries are working do: make test ========================================= make[1]: Leaving directory `/home/hazelsct/petsc-3.0.0.dfsg' PETSC_DIR=/home/hazelsct/petsc-3.0.0.dfsg PETSC_ARCH=linux-gnu-c-opt \ ./config/configure.py --with-shared --with-debugging=0 \ --useThreads 0 --with-mpi-dir=/usr/lib/openmpi --with-mpi-shared=1 \ --with-blas-lib=-lblas --with-lapack-lib=-llapack \ --with-umfpack=1 --with-umfpack-include=/usr/include/suitesparse \ --with-umfpack-lib=[/usr/lib/libumfpack.so,/usr/lib/libamd.so] \ --with-superlu=1 --with-superlu-include=/usr/include/superlu \ --with-superlu-lib=/usr/lib/libsuperlu.so \ --with-spooles=1 --with-spooles-include=/usr/include/spooles \ --with-spooles-lib=/usr/lib/libspooles.so \ --with-hypre=1 --with-hypre-dir=/usr \ --with-scotch=1 --with-scotch-include=/usr/include/scotch \ --with-scotch-lib=/usr/lib/libscotch.so ================================================================================= Configuring PETSc to compile on your system ================================================================================= TESTING: configureExternalPackagesDir from config.framework(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/framework.py:815) TESTING: configureLibrary from PETSc.packages.PVODE(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/NetCDF.py:10) TESTING: configureMkdir from config.programs(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/programs.py:21) TESTING: configurePrograms from config.programs(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/programs.py:43) TESTING: configureDebuggers from PETSc.utilities.debuggers(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/debuggers.py:22) TESTING: configureMake from PETSc.utilities.Make(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/Make.py:21) TESTING: configureCLanguage from PETSc.utilities.languages(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/languages.py:43) TESTING: configureLanguageSupport from PETSc.utilities.languages(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/languages.py:49) TESTING: configureExternC from PETSc.utilities.languages(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/languages.py:66) TESTING: configureFortranLanguage from PETSc.utilities.languages(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/languages.py:72) TESTING: configureMercurial from config.sourceControl(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/sourceControl.py:23) TESTING: configureCVS from config.sourceControl(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/sourceControl.py:30) TESTING: configureSubversion from config.sourceControl(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/sourceControl.py:35) TESTING: configureDirectories from PETSc.utilities.petscdir(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/petscdir.py:37) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/petscdir.py:109) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/petscdir.py:116) TESTING: configureETags from PETSc.utilities.Etags(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/Etags.py:27) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/dataFilesPath.py:29) TESTING: checkMPICompilerOverride from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1269) TESTING: checkVendor from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:273) TESTING: checkInitialFlags from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:283) TESTING: checkCCompiler from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:394) TESTING: checkCPreprocessor from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:451) TESTING: checkCxxCompiler from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:557) TESTING: checkCxxPreprocessor from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:616) TESTING: checkFortranCompiler from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:726) TESTING: checkFortranComments from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:768) TESTING: checkPIC from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:807) TESTING: checkLargeFileIO from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:836) TESTING: checkArchiver from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:930) TESTING: checkSharedLinker from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1037) TESTING: checkSharedLinkerPaths from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1113) TESTING: checkLibC from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1125) TESTING: checkDynamicLinker from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1174) TESTING: output from config.setCompilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/setCompilers.py:1220) TESTING: configureCompilerFlags from config.compilerFlags(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilerFlags.py:66) TESTING: configureDebugging from PETSc.utilities.debugging(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/debugging.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/arch.py:39) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/bmakeDir.py:26) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/sharedLibraries.py:41) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/sharedLibraries.py:64) TESTING: checkRestrict from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:134) TESTING: checkCFormatting from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:276) TESTING: checkCStaticInline from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:105) TESTING: checkDynamicLoadFlag from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:286) TESTING: checkCLibraries from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:161) TESTING: checkRestrict from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:134) TESTING: checkCxxNamespace from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:324) TESTING: checkCxxOptionalExtensions from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:299) TESTING: checkCxxStaticInline from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxLibraries from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:339) TESTING: checkFortranTypeSizes from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:471) TESTING: checkFortranNameMangling from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:530) TESTING: checkFortranNameManglingDouble from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:563) TESTING: checkFortranPreprocessor from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:573) TESTING: checkFortranDefineCompilerOption from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:594) TESTING: checkFortranLibraries from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:611) TESTING: checkFortranLinkingCxx from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:921) TESTING: checkFortran90 from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:956) TESTING: checkFortran90Interface from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:1016) TESTING: checkFortran90Array from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:1054) TESTING: setupFrameworkCompilers from config.compilers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/compilers.py:1177) TESTING: configureLibrary from PETSc.packages.Mathematica(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/Mathematica.py:15) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/fortranCPP.py:28) TESTING: checkStdC from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:76) TESTING: checkStat from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:109) TESTING: checkSysWait from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:144) TESTING: checkTime from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:166) TESTING: checkMath from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:174) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:54) TESTING: checkRecursiveMacros from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:189) TESTING: checkMemcmp from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:79) TESTING: checkSysinfo from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:102) TESTING: checkVPrintf from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:125) TESTING: checkVFPrintf from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:132) TESTING: checkVSNPrintf from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:139) TESTING: checkSignalHandlerType from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:147) TESTING: checkFreeReturnType from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:157) TESTING: checkVariableArgumentLists from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:163) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/functions.py:30) TESTING: configureFPTrap from PETSc.utilities.FPTrap(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/FPTrap.py:27) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/getResidentSetSize.py:32) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/fortranCommandLine.py:26) TESTING: checkSizeTypes from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:44) TESTING: checkFileTypes from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:54) TESTING: checkIntegerTypes from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:49) TESTING: checkPID from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:60) TESTING: checkUID from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:64) TESTING: checkSignal from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:71) TESTING: checkC99Complex from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:92) TESTING: checkCxxComplex from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:101) TESTING: checkFortranKind from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:122) TESTING: checkFortranDReal from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:134) TESTING: checkConst from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:142) TESTING: checkEndian from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:198) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:251) TESTING: checkBitsPerByte from config.types(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/types.py:293) TESTING: configureScalarType from PETSc.utilities.scalarTypes(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/scalarTypes.py:32) TESTING: configurePrecision from PETSc.utilities.scalarTypes(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/scalarTypes.py:48) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkMath from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:201) TESTING: checkMathErf from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:217) TESTING: checkDynamic from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:226) TESTING: configureTimers from PETSc.utilities.timer(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/timer.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:35) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:45) TESTING: configureMissingFunctions from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:51) TESTING: configureMissingSignals from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:71) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:88) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:110) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/missing.py:134) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/libraryOptions.py:46) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/libraryOptions.py:98) TESTING: configureLibrary from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:679) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: configureConversion from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:185) TESTING: configureMPI2 from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:169) TESTING: configureTypes from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:205) TESTING: configureMPITypes from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:216) TESTING: configureMissingPrototypes from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:273) TESTING: SGIMPICheck from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:588) TESTING: CxxMPICheck from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:598) TESTING: FortranMPICheck from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:617) TESTING: configureIO from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:642) TESTING: checkSharedLibrary from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:122) TESTING: configureMPIEXEC from config.packages.MPI(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/MPI.py:134) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/Matlab.py:40) TESTING: alternateConfigureLibrary from PETSc.packages.TetGen(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from config.packages.Boost(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/package.py:421) TESTING: alternateConfigureLibrary from PETSc.packages.Sieve(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.expat(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.hdf5(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.Generator(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureLibrary from PETSc.packages.Scotch(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:324) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: checkSharedLibrary from PETSc.packages.Scotch(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:320) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from config.packages.Fiat(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/package.py:421) TESTING: alternateConfigureLibrary from PETSc.packages.FFC(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.babel(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.P3Dlib(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.Suggar(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureLibrary from config.packages.BlasLapack(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/BlasLapack.py:429) TESTING: checkLib from config.packages.BlasLapack(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/BlasLapack.py:94) TESTING: checkESSL from config.packages.BlasLapack(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/BlasLapack.py:483) TESTING: checkPESSL from config.packages.BlasLapack(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/BlasLapack.py:489) TESTING: checkMissing from config.packages.BlasLapack(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/packages/BlasLapack.py:495) TESTING: configureLibrary from config.packages.UMFPACK(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/package.py:367) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: checkSharedLibrary from config.packages.UMFPACK(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/package.py:417) TESTING: configureLibrary from PETSc.packages.SuperLU(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/SuperLU.py:75) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: checkSharedLibrary from PETSc.packages.SuperLU(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:320) TESTING: alternateConfigureLibrary from PETSc.packages.spai(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.pARMS(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.PLAPACK(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.ml(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.PaStiX(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureLibrary from PETSc.packages.hypre(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/hypre.py:103) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: checkSharedLibrary from PETSc.packages.hypre(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:320) TESTING: alternateConfigureLibrary from PETSc.packages.blopex(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureLibrary from PETSc.packages.spooles(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:324) TESTING: check from config.libraries(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/libraries.py:126) TESTING: checkInclude from config.headers(/home/hazelsct/petsc-3.0.0.dfsg/config/BuildSystem/config/headers.py:63) TESTING: checkSharedLibrary from PETSc.packages.spooles(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:320) TESTING: alternateConfigureLibrary from PETSc.packages.blacs(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.SCALAPACK(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.Numpy(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.ParMetis(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.Prometheus(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureLibrary from PETSc.packages.X11(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/X11.py:91) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.Zoltan(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/package.py:372) TESTING: configureRegression from PETSc.utilities.Regression(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/utilities/Regression.py:32) TESTING: configureInline from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:231) TESTING: configureSolaris from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:241) TESTING: configureLinux from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:255) TESTING: configureWin32 from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:261) TESTING: configureScript from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:327) TESTING: configureInstall from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:357) TESTING: configureGCOV from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:371) TESTING: configureFortranFlush from PETSc.Configure(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/Configure.py:376) TESTING: alternateConfigureLibrary from PETSc.packages.petsc4py(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/petsc4py.py:69) TESTING: alternateConfigureLibrary from PETSc.packages.mpi4py(/home/hazelsct/petsc-3.0.0.dfsg/config/PETSc/packages/mpi4py.py:54) Compilers: C Compiler: mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -O C++ Compiler: mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -O -fPIC Fortran Compiler: mpif90 -fPIC -Wall -Wno-unused-variable -O Linkers: Shared linker: mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -O Dynamic linker: mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -O PETSc: PETSC_ARCH: linux-gnu-c-opt PETSC_DIR: /home/hazelsct/petsc-3.0.0.dfsg ** ** Now build the libraries with "make all" ** Clanguage: C PETSc shared libraries: enabled PETSc dynamic libraries: disabled Scalar type:real MPI: Includes: -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib X11: Includes: [''] Library: ['-lX11'] BLAS/LAPACK: -llapack -lblas -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -L/lib -lm -lm -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -L/lib -lm -lm spooles: Includes: -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles Library: -L/usr/lib -lspooles hypre: Includes: -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include Library: -L/usr/lib -lHYPRE -lmpi_cxx -lstdc++ Scotch: Version: Includes: ['/usr/lib/openmpi/include', '/usr/lib/openmpi/lib', '/usr/include/scotch'] Library: ['/usr/lib/libscotch.so'] SuperLU: Includes: -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/superlu Library: -L/usr/lib -lsuperlu UMFPACK: Includes: -I/usr/include/suitesparse -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib Library: -L/usr/lib -lumfpack -lamd /usr/bin/make PETSC_ARCH=linux-gnu-c-opt PETSC_DIR=/home/hazelsct/petsc-3.0.0.dfsg \ PETSC_INSTALL_DIR=/usr/lib/petscdir/3.0.0 \ SL_LINKER_SUFFIX_VERSIONED="so.3.0.0" make[1]: Entering directory `/home/hazelsct/petsc-3.0.0.dfsg' ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems To subscribe to the PETSc announcement list, send mail to majordomo@mcs.anl.gov with the message: subscribe petsc-announce To subscribe to the PETSc users mailing list, send mail to majordomo@mcs.anl.gov with the message: subscribe petsc-users ========================================== On Tue Jun 16 15:51:00 EDT 2009 on workhorse Machine characteristics: Linux workhorse 2.6.28-4-generic #9-Ubuntu SMP Tue Jan 6 19:33:48 UTC 2009 x86_64 GNU/Linux ----------------------------------------- Using PETSc directory: /home/hazelsct/petsc-3.0.0.dfsg Using PETSc arch: linux-gnu-c-opt ----------------------------------------- PETSC_VERSION_RELEASE 1 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 0 PETSC_VERSION_SUBMINOR 0 PETSC_VERSION_PATCH 5 PETSC_VERSION_DATE "Dec, 19, 2008" PETSC_VERSION_PATCH_DATE "Mon Apr 13 09:15:37 CDT 2009" PETSC_VERSION_HG "131aaf54d5a00500b8913c368c685dab5521f4c8" PETSC_VERSION_DATE_HG "Mon Apr 13 09:15:15 2009 -0500" PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: --with-shared --with-debugging=0 --useThreads 0 --with-mpi-dir=/usr/lib/openmpi --with-mpi-shared=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-umfpack=1 --with-umfpack-include=/usr/include/suitesparse --with-umfpack-lib="[/usr/lib/libumfpack.so,/usr/lib/libamd.so]" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=/usr/lib/libsuperlu.so --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=/usr/lib/libspooles.so --with-hypre=1 --with-hypre-dir=/usr --with-scotch=1 --with-scotch-include=/usr/include/scotch --with-scotch-lib=/usr/lib/libscotch.so Using configuration flags: #define INCLUDED_PETSCCONF_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_UMFPACK 1 #define PETSC_STATIC_INLINE static inline #define PETSC_HAVE_SPOOLES 1 #define PETSC_DIR_SEPARATOR '/' #define PETSC_HAVE_HYPRE 1 #define PETSC_PATH_SEPARATOR ':' #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_RESTRICT __restrict__ #define PETSC_HAVE_X11 1 #define PETSC_HAVE_SCOTCH 1 #define PETSC_HAVE_SUPERLU 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_HAVE_MPI 1 #define PETSC_HAVE_BLASLAPACK 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_MEMORY_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_USING_F90 1 #define PETSC_PRINTF_FORMAT_CHECK(A,B) __attribute__((format (printf, A, B))) #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_USE_F90_SRC_IMPL 1 #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBBLAS 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBGFORTRAN 1 #define PETSC_HAVE_LIBLAPACK 1 #define PETSC_HAVE_LIBNSL 1 #define PETSC_HAVE_LIBMPI_CXX 1 #define PETSC_HAVE_LIBM 1 #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_LIBMPI_F77 1 #define PETSC_HAVE_LIBGCC_S 1 #define PETSC_HAVE_LIBGFORTRANBEGIN 1 #define PETSC_HAVE_LIBMPI_F90 1 #define PETSC_HAVE_LIBSTDC__ 1 #define PETSC_HAVE_LIBHYPRE 1 #define PETSC_HAVE_LIBAMD 1 #define PETSC_HAVE_LIBSUPERLU 1 #define PETSC_HAVE_LIBUTIL 1 #define PETSC_HAVE_LIBMPI 1 #define PETSC_HAVE_LIBOPEN_PAL 1 #define PETSC_HAVE_LIBUMFPACK 1 #define PETSC_HAVE_LIBSPOOLES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_LIBOPEN_RTE 1 #define PETSC_HAVE_LIBSCOTCH 1 #define PETSC_ARCH_NAME "linux-gnu-c-opt" #define PETSC_ARCH linux #define PETSC_DIR /home/hazelsct/petsc-3.0.0.dfsg #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_EXTERN_CXX #define PETSC_USE_ERRORCHECKING 1 #define PETSC_MISSING_DREAL 1 #define PETSC_SIZEOF_MPI_COMM 8 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_USE_FORTRANKIND 1 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETPWUID 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE__GFORTRAN_IARGC 1 #define PETSC_SIGNAL_CAST #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GFORTRAN_IARGC 1 #define PETSC_USE_GDB_DEBUGGER 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define HAVE_GZIP 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_BLASLAPACK_UNDERSCORE 1 ----------------------------------------- Using include paths: -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch ------------------------------------------ Using C/C++ compiler: mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -O C/C++ Compiler version: Using Fortran compiler: mpif90 -fPIC -Wall -Wno-unused-variable -O Fortran Compiler version: ----------------------------------------- Using C/C++ linker: mpicc Using Fortran linker: mpif90 ----------------------------------------- Using libraries: -L/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib -L/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lX11 -L/usr/lib -lspooles -lHYPRE -lmpi_cxx -lstdc++ -lsuperlu -lumfpack -lamd -llapack -lblas -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -L/usr/lib/gcc/x86_64-linux-gnu -lm -lm -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -lm -lm -lscotch -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/lib -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -lmpi_f90 -lmpi_f77 -lgfortranbegin -lgfortran -lm -lm -L/usr/lib/gcc/x86_64-linux-gnu -lm -lm -lmpi_cxx -lstdc++ -lmpi_cxx -lstdc++ -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl ------------------------------------------ Using mpiexec: mpiexec ========================================== /bin/rm -f -f /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib/libpetsc*.* /bin/rm -f -f /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include/petsc*.mod BEGINNING TO COMPILE LIBRARIES IN ALL DIRECTORIES ========================================= libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/inline libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/socket libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/socket/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/ascii libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/ascii/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/ascii/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/binary libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/binary/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/binary/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/binary/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/string libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/string/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/draw libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/draw/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/draw/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/impls/vu libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/viewer/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/impls/x libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/impls/x/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/impls/ps libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/draw/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/error libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/error/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/error/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/dll libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/dll/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/fileio libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/fileio/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/fileio/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/memory libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/memory/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/memory/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/objects libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/objects/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/objects/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/time libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/time/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/plog libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/plog/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/plog/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/plog/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/plog/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/random libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/random/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/random/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/random/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/random/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/random/impls/rand libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/random/impls/rand48 libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/bag libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/bag/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/bag/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/verbose libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/verbose/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/verbose/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/f90-src libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/f90-src/fsrc mpif90 -c -fPIC -Wall -Wno-unused-variable -O -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o f90_fwrap.o f90_fwrap.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib/libpetsc.a f90_fwrap.o libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/f90-mod mpif90 -c -fPIC -Wall -Wno-unused-variable -O -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petscmod.o petscmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib/libpetsc.a petscmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/sys/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/interface/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls/seq/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls/seq/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls/mpi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls/mpi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls/shared libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls/shared/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/impls/hypre libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/vec/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/interface/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/general libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/general/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/stride libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/stride/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/block libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/block/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/block/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/impls/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/is/utils/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/impls/constant libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/impls/string libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/pf/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/f90-mod mpif90 -c -fPIC -Wall -Wno-unused-variable -O -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petscvecmod.o petscvecmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib/libpetscvec.a petscvecmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/vec/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/interface/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense/seq/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense/mpi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense/mpi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/dense/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/spooles /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/superlu libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/umfpack libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/csrperm libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/crl libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/seq/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi mpiaij.c: In function ‘MatLoad_MPIAIJ’: mpiaij.c:2807: warning: ‘maxnz’ may be used uninitialized in this function libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi/spooles /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi/csrperm libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi/crl libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/aij/aij libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/shell libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/shell/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/shell/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/seq/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/seq/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/mpi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/mpi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/baij/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/adj libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/adj/mpi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/adj/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/maij libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/is libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/is/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/seq/spooles /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/seq/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/seq/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/mpi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/mpi/spooles /usr/include/spooles/MPI/../timings.h:4: warning: ‘TV’ defined but not used /usr/include/spooles/MPI/../timings.h:5: warning: ‘TZ’ defined but not used libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/sbaij/mpi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/hypre libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/normal libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/normal/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/lrc libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/lrc/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/scatter libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/scatter/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/blockmat libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/blockmat/seq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/composite libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/composite/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/mffd libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/mffd/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/mffd/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/transpose libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/transpose/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/matfd libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/matfd/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/matfd/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/impls/scotch scotch.c: In function ‘MatPartitioningApply_Scotch’: scotch.c:132: warning: cast from pointer to integer of different size scotch.c:135: warning: cast to pointer from integer of different size scotch.c:137: warning: cast from pointer to integer of different size scotch.c:138: warning: cast to pointer from integer of different size scotch.c:139: warning: cast to pointer from integer of different size scotch.c:211: warning: cast from pointer to integer of different size libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/impls/scotch/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/impls/scotch/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/partition/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/order libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/order/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/order/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/color libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/color/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/f90-mod mpif90 -c -fPIC -Wall -Wno-unused-variable -O -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petscmatmod.o petscmatmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib/libpetscmat.a petscmatmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/mat/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/jacobi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/jacobi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/none libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/sor libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/sor/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/shell libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/shell/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/bjacobi libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/bjacobi/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/bjacobi/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/mg libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/mg/dmmg libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/mg/dmmg/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/mg/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/mg/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/eisens libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/pc/impls/eisens/ftn-auto libfast in: 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/home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/cheby/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/rich libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/rich/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/lsqr libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/preonly libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/tcqmr libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/tfqmr libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/qcg libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/qcg/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/bicg libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/minres libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/symmlq libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/lcd libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/ibcgs libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/ksp/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ksp/f90-mod mpif90 -c -fPIC -Wall -Wno-unused-variable -O -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petsckspmod.o petsckspmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib/libpetscksp.a petsckspmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/interface/noise libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/interface/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/mf libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/mf/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/ls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/ls/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/ls/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/tr libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/test libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/picard libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/examples/tutorials/ex10d libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/f90-mod mpif90 -c -fPIC -Wall -Wno-unused-variable -O -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petscsnesmod.o petscsnesmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib/libpetscsnes.a petscsnesmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/snes/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/explicit libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/explicit/euler libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/explicit/rk libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/explicit/rk/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/implicit libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/implicit/beuler libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/implicit/cn libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/pseudo libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/pseudo/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/python libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/impls/python/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/ts/f90-mod mpif90 -c -fPIC -Wall -Wno-unused-variable -O -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petsctsmod.o petsctsmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib/libpetscts.a petsctsmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/interface/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls/basic libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls/basic/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls/mapping libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls/mapping/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/impls/mapping/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ao/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/src libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/src/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/src/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/src/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/examples/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/utils libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/utils/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/utils/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/da/utils/f90-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/adda libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/adda/examples libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/adda/examples/tests libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/adda/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/f90-mod mpif90 -c -fPIC -Wall -Wno-unused-variable -O -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o petscdmmod.o petscdmmod.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib/libpetscdm.a petscdmmod.o /bin/cp -f *.mod /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/dm/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/fun3d libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/fun3d/comp libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/fun3d/incomp libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/semiLagrange libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/semiLagrange/interface libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/semiLagrange/interface/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/semiLagrange/impls libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/contrib/semiLagrange/impls/da libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/benchmarks libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/fortran libfast in: /home/hazelsct/petsc-3.0.0.dfsg/src/fortran/fsrc mpif90 -c -fPIC -Wall -Wno-unused-variable -O -I/home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/include -I/home/hazelsct/petsc-3.0.0.dfsg/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/lib -I/usr/include/spooles -I/usr/include -I/usr/include/superlu -I/usr/include/suitesparse -I/usr/include/scotch -o somefort.o somefort.F /usr/bin/ar cr /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib/libpetsc.a somefort.o libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include/finclude libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include/finclude/ftn-auto libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include/finclude/ftn-custom libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include/private libfast in: /home/hazelsct/petsc-3.0.0.dfsg/include/sieve libfast in: /home/hazelsct/petsc-3.0.0.dfsg/tutorials libfast in: /home/hazelsct/petsc-3.0.0.dfsg/tutorials/multiphysics Completed building libraries ========================================= making shared libraries in /home/hazelsct/petsc-3.0.0.dfsg/linux-gnu-c-opt/lib building libpetsc.so building libpetscvec.so building libpetscmat.so building libpetscdm.so building libpetscksp.so building libpetscsnes.so building libpetscts.so building libpetsccontrib.so ========================================= Now to check if the libraries are working do: make test ========================================= make[1]: Leaving directory `/home/hazelsct/petsc-3.0.0.dfsg' touch build-arch touch build-indep touch build fakeroot debian/rules binary install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/bin echo "#!/bin/sh -e" > \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/bin/petscarch echo "echo linux-gnu-c-opt" >> \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/bin/petscarch chmod +x debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/bin/petscarch cp -p debian/petscarch.1 debian/mpirun_lam.1 \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/bin gzip --best debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/bin/*.1 install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/conf for cfile in `ls conf`; do \ grep -v top_builddir conf/$cfile | \ sed "s/`echo /home/hazelsct/petsc-3.0.0.dfsg | sed s/\\\\//\\\\\\\\\\\\//g`/\/usr\/lib\/petscdir\/3.0.0/g" > \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/conf/$cfile ; \ done install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/linux-gnu-c-opt/conf for cfile in `ls linux-gnu-c-opt/conf`; do \ grep -v top_builddir linux-gnu-c-opt/conf/$cfile | \ sed "s/`echo /home/hazelsct/petsc-3.0.0.dfsg | sed s/\\\\//\\\\\\\\\\\\//g`/\/usr\/lib\/petscdir\/3.0.0/g" > \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/linux-gnu-c-opt/conf/$cfile ; \ done rm -f debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/linux-gnu-c-opt/conf/*.py cp -a linux-gnu-c-opt/include debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/linux-gnu-c-opt/ install -d debian/libpetsc3.0.0-dbg/usr/lib/petscdir/3.0.0/linux-gnu-c-debug/conf for cfile in `ls linux-gnu-c-debug/conf`; do \ grep -v top_builddir linux-gnu-c-debug/conf/$cfile | \ sed "s/`echo /home/hazelsct/petsc-3.0.0.dfsg | sed s/\\\\//\\\\\\\\\\\\//g`/\/usr\/lib\/petscdir\/3.0.0/g" > \ debian/libpetsc3.0.0-dbg/usr/lib/petscdir/3.0.0/linux-gnu-c-debug/conf/$cfile ; \ done rm -f debian/libpetsc3.0.0-dbg/usr/lib/petscdir/3.0.0/linux-gnu-c-debug/conf/*.py cp -a linux-gnu-c-debug/include debian/libpetsc3.0.0-dbg/usr/lib/petscdir/3.0.0/linux-gnu-c-debug/ install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/finclude cp -p include/*.h include/*.hh \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include cp -p include/finclude/*.h include/finclude/*.h90 \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/finclude install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/adic cp -p include/adic/*.h \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/adic install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/sieve cp -a include/sieve/*.hh include/sieve/problem \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/sieve install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/private cp -p include/private/*.h \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/private cd debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include && \ ln -s ../linux-gnu-c-opt/include/*.h . install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/src/mat/impls/aij/mpi sed "s/..\/src/src/" < src/mat/impls/aij/mpi/mpiaij.h > \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/src/mat/impls/aij/mpi/mpiaij.h install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/src/mat/impls/aij/seq cp -p src/mat/impls/aij/seq/aij.h \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/src/mat/impls/aij/seq/aij.h install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/src/mat/impls/dense/mpi sed "s/..\/src/src/" < src/mat/impls/dense/mpi/mpidense.h > \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/src/mat/impls/dense/mpi/mpidense.h install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/src/mat/impls/dense/seq cp -p src/mat/impls/dense/seq/dense.h \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/src/mat/impls/dense/seq/dense.h install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/src/sys cp -p src/sys/ctable.h \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/include/src/sys/ install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/aclocal cp -p debian/petsc.m4 debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/aclocal cp -p debian/math-blaslapack.m4 debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/aclocal install -d debian/libpetsc3.0.0/usr/lib cp -a linux-gnu-c-opt/lib debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/linux-gnu-c-opt/ cp -a linux-gnu-c-debug/lib debian/libpetsc3.0.0-dbg/usr/lib/petscdir/3.0.0/linux-gnu-c-debug/ for LIB in `cd linux-gnu-c-opt/lib && ls *.so.*` ; \ do \ mv debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/linux-gnu-c-opt/lib/$LIB \ debian/libpetsc3.0.0/usr/lib/$LIB ; \ ln -s ../../../../$LIB \ debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/linux-gnu-c-opt/lib/$LIB ; \ done install -d debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/lib ln -s ../linux-gnu-c-opt/lib debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/lib/libO ln -s ../linux-gnu-c-opt/lib debian/libpetsc3.0.0-dev/usr/lib/petscdir/3.0.0/lib/libO_c++ install -d debian/libpetsc3.0.0-dbg/usr/lib/petscdir/3.0.0/lib ln -s ../linux-gnu-c-debug/lib debian/libpetsc3.0.0-dbg/usr/lib/petscdir/3.0.0/lib/libg ln -s ../linux-gnu-c-debug/lib debian/libpetsc3.0.0-dbg/usr/lib/petscdir/3.0.0/lib/libg_c++ touch install-arch install -d debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/include/finclude cp -p include/*.html \ debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/include cp -p include/finclude/*.html \ debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/include/finclude install -d debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/include/adic cp -p include/adic/*.html \ debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/include/adic install -d debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/include/sieve cp -p include/sieve/*.html \ debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/include/sieve install -d debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/include/private cp -p include/private/*.html \ debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/include/private for HEADERDOC in `cd debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/ && find include -name \*.h.html -print | sed s/.h.html/.h/`; \ do \ dh_link -ppetsc3.0.0-doc \ usr/lib/petscdir/3.0.0/$HEADERDOC \ usr/share/doc/petsc3.0.0-doc/$HEADERDOC; \ done for TESTDIR in `find src -name tests -print | sed "s/src\///"` \ `find src -name tutorials -print | sed "s/src\///"` benchmarks \ snes/examples/tutorials/ex10d; \ do \ install -d debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/src/$TESTDIR; \ for TESTDOC in `find src/$TESTDIR -name \*.html -print`; do \ cp -a $TESTDOC \ debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/src/$TESTDIR; \ done ; \ done rmdir `find debian/petsc3.0.0-doc -empty -type d -print` rmdir `find debian/petsc3.0.0-doc -empty -type d -print` rmdir `find debian/petsc3.0.0-doc -empty -type d -print` rmdir `find debian/petsc3.0.0-doc -empty -type d -print` for TESTDIR in `find src -name tests -print | sed "s/src\///"` \ `find src -name tutorials -print | sed "s/src\///"` benchmarks; \ do \ install -d debian/extemp/src/$TESTDIR; \ cp -a src/$TESTDIR/* debian/extemp/src/$TESTDIR; \ done for MAKEFILE in `find src -name makefile -print | sed "s/src\///"`; \ do \ if [ -d debian/extemp/src/`echo $MAKEFILE | sed "s/makefile//"` ] ;\ then \ cp -p src/$MAKEFILE debian/extemp/src/$MAKEFILE; \ fi; \ done rm -f `find debian/extemp -name \*.html -print` rm -f debian/extemp/src/makefile sed "s/inline//" < src/makefile | grep -v include \ > debian/extemp/src/makefile grep -v \$Id makefile | grep -v DIRS >> debian/extemp/src/makefile cd debian/extemp && tar czf src.tar.gz src mv debian/extemp/src.tar.gz \ debian/petsc3.0.0-doc/usr/share/doc/petsc3.0.0-doc/src.tar.gz rm -rf debian/extemp dh_link -ppetsc3.0.0-doc \ usr/share/doc/petsc3.0.0-doc/docs \ usr/lib/petscdir/3.0.0/docs \ usr/share/doc/petsc3.0.0-doc/docs/index.html \ usr/lib/petscdir/3.0.0/index.html \ usr/share/doc/petsc3.0.0-doc/makefile.html \ usr/lib/petscdir/3.0.0/makefile.html \ usr/share/doc/petsc3.0.0-doc/src \ usr/lib/petscdir/3.0.0/src touch install-indep dh_testdir -i dh_testroot -i dh_installdirs -i dh_installdocs -i rm -f `find debian/petsc3.0.0-doc -name ?akefile -print` rm -f `find debian/petsc3.0.0-doc -name *.cit* -print` rm -f `find debian/petsc3.0.0-doc -empty -type f -print` dh_installchangelogs -i dh_compress -i -X.xbm -X.pdf dh_fixperms -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package `petsc-dev' in `../petsc-dev_3.0.0.dfsg-5lenny1_all.deb'. dpkg-deb: building package `petsc3.0.0-doc' in `../petsc3.0.0-doc_3.0.0.dfsg-5lenny1_all.deb'. dh_testdir -a dh_testroot -a mv -f debian/control debian/control.in sed "s/3.0.0/3.0.0/" < debian/control.in | \ sed "s/3.0.0-doc/3.0.0-doc/" | \ sed "s/Provides: petsc3.0.0-dev/Provides: petsc3.0.0-dev/" | \ sed "s/Provides: petsc3.0.0-dbg/Provides: petsc3.0.0-dbg/" \ > debian/control if [ "main" = "contrib" ]; then \ sed "s/Section: lib/Section: contrib\/lib/" < debian/control > \ debian/control.contrib ; \ mv -f debian/control.contrib debian/control ; \ fi for ARCHGEN in debian/libpetsc3.0.0-dev.docs debian/libpetsc3.0.0-dev.postinst debian/libpetsc3.0.0-dev.prerm; do \ rm -f $ARCHGEN ; \ sed "s/petsc_arch/linux-gnu-c-opt/" < \ `echo "$ARCHGEN.in" | sed "s/petsc3.0.0/petsc3.0.0/"` | \ sed "s/petsc_ver/3.0.0/" > $ARCHGEN; \ done rm -f debian/*.substvars if [ "openmpi" = "openmpi" ]; then \ echo "mpi=openmpi-bin" > debian/libpetsc3.0.0.substvars; \ echo "mpi-dev=libopenmpi-dev" > debian/libpetsc3.0.0-dev.substvars; \ elif [ "openmpi" = "mpich" -o "openmpi" = "mpich-mpd" -o "openmpi" = "mpich-shmem" ]; then \ echo "mpi=openmpi-bin (>= 1.2.7)" > debian/libpetsc3.0.0.substvars; \ echo "mpi-dev=libopenmpi1.0-dev (>= 1.2.7)" > debian/libpetsc3.0.0-dev.substvars; \ elif [ "openmpi" = "lam" ]; then \ echo "mpi=lam-runtime" > debian/libpetsc3.0.0.substvars; \ echo "mpi-dev=lam4-dev" > debian/libpetsc3.0.0-dev.substvars; \ else \ echo "Unknown MPI implementation, stopping"; \ exit 1; \ fi if [ -e /usr/lib/libsidl.so ]; then \ echo "babel-dev=libsidl-dev" >> debian/libpetsc3.0.0-dev.substvars; \ else \ echo "babel-dev=" >> debian/libpetsc3.0.0-dev.substvars; \ fi if [ "linux-gnu" = "linux_alpha_dec" ]; then \ echo "linear-algebra-dev=cxml" >> debian/libpetsc3.0.0-dev.substvars; \ echo "petsc-compilers=ccc, cfal" >> debian/libpetsc3.0.0-dev.substvars; \ else \ echo "linear-algebra-dev=libblas-dev | libblas-3gf.so, liblapack-dev | liblapack-3gf.so" >> debian/libpetsc3.0.0-dev.substvars; \ echo "petsc-compilers=gfortran" >> debian/libpetsc3.0.0-dev.substvars; \ fi if [ "main" = "main" ]; then \ echo "petsc-extra-dev=" >> debian/libpetsc3.0.0-dev.substvars; \ elif [ "main" = "contrib" ]; then \ echo "petsc-extra-dev=libparmetis-dev" >> debian/libpetsc3.0.0-dev.substvars; \ else \ echo "Unknown Debian distribution, stopping"; \ exit 1; \ fi dh_installdirs -a dh_installdocs -a dh_installchangelogs -a dh_strip -a -Xlibg dh_makeshlibs -a -m3.0.0 dh_compress -a dh_fixperms -a dh_installdeb -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol PetscMemzero used by debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscInfoDeactivateClass used by debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol DAGetInfo used by debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscFListAdd used by debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol DAGlobalToLocalEnd used by debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscViewerASCIIGetStdout used by debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol _PetscLogPLB used by debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscObjectGetComm used by debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol DAGlobalToLocalBegin used by debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscTypeCompare used by debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: 34 other similar warnings have been skipped (use -v to see them all). dpkg-shlibdeps: warning: symbol MatCreateShell used by debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol KSPSolve used by debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscFListAdd used by debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscViewerASCIIMonitorDestroy used by debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscViewerASCIIOpen used by debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol VecGetArray_Private used by debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscViewerFlush used by debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol KSPSetOptionsPrefix used by debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscOptionsList used by debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol SNESGetIterationNumber used by debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: 129 other similar warnings have been skipped (use -v to see them all). dpkg-shlibdeps: warning: symbol PetscSortIntWithArray used by debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol isend_len used by debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PETSC_NULL_DOUBLE_Fortran used by debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscOptionsList used by debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscStrstr used by debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol _BT_mask used by debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscMallocValidate used by debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscFPrintf used by debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscViewerGetFormat used by debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscCommDestroy used by debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: 165 other similar warnings have been skipped (use -v to see them all). dpkg-shlibdeps: warning: symbol PetscMapSetBlockSize used by debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscMapInitialize used by debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PETSC_NULL_DOUBLE_Fortran used by debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol VecGetArray_Private used by debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscObjectQuery used by debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscStrstr used by debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol VecSetRandom used by debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscMapGetSize used by debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol MatCreateMAIJ used by debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol MatMultTranspose used by debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: 244 other similar warnings have been skipped (use -v to see them all). dpkg-shlibdeps: warning: symbol PetscViewerRestoreSingleton used by debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol HYPRE_BoomerAMGSetTruncFactor used by debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscViewerASCIIOpen used by debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol ISAllGather used by debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol MatPartitioningCreate used by debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol MatCholeskyFactorSymbolic used by debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol MatConvert used by debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscDrawLGAddPoint used by debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol MatGetDiagonal used by debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol MatMultTranspose used by debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: 395 other similar warnings have been skipped (use -v to see them all). dpkg-shlibdeps: warning: symbol PetscViewerASCIIMonitorDestroy used by debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol DMCompositeGetGlobalISs used by debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PETSC_NULL_DOUBLE_Fortran used by debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscViewerASCIIOpen used by debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol VecGetArray_Private used by debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PCMGSetR used by debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol KSPSetOptionsPrefix used by debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscOptionsList used by debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol DMDestroy used by debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscStrstr used by debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: 250 other similar warnings have been skipped (use -v to see them all). dpkg-shlibdeps: warning: symbol PetscMapSetBlockSize used by debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscViewerRestoreSingleton used by debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol ISInvertPermutation used by debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscMapInitialize used by debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol ISStrideGetInfo used by debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol _BT_mask used by debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol ISColoringView used by debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscViewerASCIIPopTab used by debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol PetscObjectDereference used by debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: symbol VecScatterView used by debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0 found in none of the libraries. dpkg-shlibdeps: warning: 263 other similar warnings have been skipped (use -v to see them all). dpkg-shlibdeps: warning: dependency on libmpi_f90.so.0 could be avoided if "debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetsc.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libstdc++.so.6 could be avoided if "debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetsc.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libamd.so.3.1.0 could be avoided if "debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetsc.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libutil.so.1 could be avoided if "debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetsc.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libmpi_cxx.so.0 could be avoided if "debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetsc.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libnsl.so.1 could be avoided if "debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetsc.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgcc_s.so.1 could be avoided if "debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetsc.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libHYPRE-2.4.0.so could be avoided if "debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetsc.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libopen-rte.so.0 could be avoided if "debian/libpetsc3.0.0/usr/lib/libpetsccontrib.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscts.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscvec.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscdm.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscksp.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetsc.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscsnes.so.3.0.0 debian/libpetsc3.0.0/usr/lib/libpetscmat.so.3.0.0" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package `libpetsc3.0.0-dev' in `../libpetsc3.0.0-dev_3.0.0.dfsg-5lenny1_amd64.deb'. dpkg-deb: building package `libpetsc3.0.0' in `../libpetsc3.0.0_3.0.0.dfsg-5lenny1_amd64.deb'. dpkg-deb: building package `libpetsc3.0.0-dbg' in `../libpetsc3.0.0-dbg_3.0.0.dfsg-5lenny1_amd64.deb'. signfile petsc_3.0.0.dfsg-5lenny1.dsc dpkg-genchanges >../petsc_3.0.0.dfsg-5lenny1_amd64.changes dpkg-genchanges: not including original source code in upload signfile petsc_3.0.0.dfsg-5lenny1_amd64.changes dpkg-buildpackage: binary and diff upload (original source NOT included)